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Bioinformatik
Project in Bioinformatics
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feature/allowingJsonInput
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Branches
6
feature/ACO_Implementation
feature/allowingJsonInput
feature/fixingCmake
feature/refactoringUI
main
default
protected
refactor/clean_opengl_visualization
6 results
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Created with Raphaël 2.2.0
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Added scores
main
main
Finished as much of the 3d algorithm as is reasonable
all 2d cases work
some fixes to 2d folding, S2-7 still broken
fix for 2d folding when b' and b'' are swapped
fixed the last things for the merge to work
rendered path
Merge feature/branch-name into main
changed main back and added runaco3d.cpp
feature/ACO_Imp…
feature/ACO_Implementation
Merge branch 'feature/3dFolding' into 'main'
new hyperparameters
Fixed 2d folding issue when seperator between two super blocks was of even length
new hyperparameters
Merge branch 'feature/3dFolding' into 'main'
Fixed some of the 2d problems, most folds still not working specifically in algorithm B, but 2 examples working so far (one 3d one 2d)
Pushed shader
Did more ui stuff to debug
Merge branch 'feature/3dFolding' into 'main'
Merge from main
Merge remote-tracking branch 'origin/main' into feature/3dFolding
WIP fix for 2d/3d algo
Merge branch 'fix/fixingUpdateScore' into 'main'
Fixed some issues i had with the tests, generally cmakelist did not work on windows, but this has been fixed and accounted for.
fixed that i could not load shaders
fixed update score by implementing manhatten distance to ensure we are looking at neighbors and not anything more than that
fixed updateScore and getNearbyPotentialAcids
3d folding works on simple example
aco so far
added aco implementation
3d folding attempt works for one side
Merge branch 'refactor/cleaned_and_refactored_opengl_visualization' into 'main'
Refactored the whole opengl visualization. This means the following
Did more refactoring, and added a hook allowing the visualization to be called externally with an hp model as a parameter
refactor/clean_…
refactor/clean_opengl_visualization
Fixed visualization to add lines sequentially, rather than adding lines between all neighborign spheres.
Folding of d' almost working
added ability to display incomplete folds, some advancements on 3d algorithm
Start of new approach, simply folding b' and b''
Merge branch 'feature/algorithmC' into 'main'
Fixed 2d algorithm
Merge remote-tracking branch 'origin/main' into feature/algorithmC
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