Update README.md

README.md

@@ -8,13 +8,20 @@ The following steps for installing sortem can be done through conda or pip. The
 
 **3) now install the gui** pip install tensorflow-addons==0.11.2 appjar
 
-**4) download the repository**:  git clone https://gitlab.au.dk/au482896/sortem.git 
+**4) go into anaconda environmental directory**: cd ${CONDA_PREFIX}
 
-**4) go into directory**: cd sortem
+**5) download the repository**:  git clone https://gitlab.au.dk/au482896/sortem
 
-**5) install the requirements**: conda install --file requirements.txt
+**5) Add sortem executable to conda-envs PATH**: ln -s ../sortem/sortem bin/.
+
+**6) Create a file called sortem**: touch sortem
+
+**7) write this into sortem file**:
+#!/bin/bash
+PYTHONPATH=${CONDA_PREFIX}/sortem:$PYTHONPATH
+python3 ${CONDA_PREFIX}/sortem/main_sortem.py $@
+**8) make the sortem file executable**: chmod 755 sortem
 
-**6) install the GUI**: pip install appjar