Commit 59b0d70d authored by Jonathan Juhl's avatar Jonathan Juhl
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Update README.md

parent c59bcadc
...@@ -40,7 +40,6 @@ The algorithm is works the following way: ...@@ -40,7 +40,6 @@ The algorithm is works the following way:
Running SortEM Running SortEM
parser = argparse.ArgumentParser(description='Run sortinator.')
parser.add_argument('--gpu_id',type=int, default= 0, help='GPU ID. The ID of the GPU to execute the operations on. ') parser.add_argument('--gpu_id',type=int, default= 0, help='GPU ID. The ID of the GPU to execute the operations on. ')
parser.add_argument('--num_cpus',type=int,default = 8,help='The maximum allowed cpus to use for preprocessing data (image resize and normalization') parser.add_argument('--num_cpus',type=int,default = 8,help='The maximum allowed cpus to use for preprocessing data (image resize and normalization')
...@@ -81,7 +80,7 @@ Running SortEM ...@@ -81,7 +80,7 @@ Running SortEM
parser.add_argument('--t_res',type=int,default=None,choices=[32,64,128,256,512],help='The maximum resolution to train the model on') parser.add_argument('--t_res',type=int,default=None,choices=[32,64,128,256,512],help='The maximum resolution to train the model on')
parser.add_argument('--minimum_size',type=int,default=500,help='the minimum size before its considered an actual cluster, anything else less is considered noise') parser.add_argument('--minimum_size',type=int,default=500,help='the minimum size before its considered an actual cluster, anything else less is considered noise')-
Example of typical run , the star file is required, and use --ctf and --noise to run on real data. Example of typical run , the star file is required, and use --ctf and --noise to run on real data.
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